PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_22694_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family bHLH
Protein Properties Length: 513aa    MW: 57474.2 Da    PI: 6.6644
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_22694_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.91.3e-06306330730
                                           HHHHHHHHHHHHHHHHHHCTSCC.C CS
                                   HLH   7 erErrRRdriNsafeeLrellPk.a 30 
                                           + Er+RR+ri++++++Lr l+P+ +
  cra_locus_22694_iso_1_len_1833_ver_3 306 ITERNRRSRIKNGLFTLRALVPNiS 330
                                           68********************955 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.8E-1522158IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.37E-11294331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.96E-5297389No hitNo description
PROSITE profilePS5088811.293299384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0047305390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-10306329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-10366401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-11366398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MAAFEGAAVE CFRPLLVNNN NKAAWDFCIV WKLGDDPSRF IEWRGCCCSG ANISRYINVK  60
EENGQELLPR CRDAHLQHPL RTEACKLLAK FPSSNPLYSG IHGEVVISKQ PRWINNASSS  120
ILDEPFGTQV LIPVLGGLIE LFSRKQVPKD QQILDFIMAQ YISSSVEQEA RAALSFKKSN  180
SKVEEPLYCP IFDDWPRKFP ATIRDPSLKF PLTLSKSNSY PSIEGSSTGS SLPTDLGSSH  240
PSCNTSPEKS SGRYPLKRSQ TLDSKTRIEA SFSSPSVIAN QPAENEDGLK ARQRAQKESY  300
QSKNLITERN RRSRIKNGLF TLRALVPNIS KVLALNSGQN ARSLEPPTPF YVIISRVLIS  360
IFVFLPXMDM TAIIGDAIEY IQELQKNVKM YEDELKDMEE EDCSGYNAEQ NVPNSCWEHE  420
VSDNQPATEF TDNPSNLMAD DLRQQMIKLE VNQIGAKDIL LRIIYKERQG GFLRLMQAMD  480
ALGLQVVDVN VITSNGSVLN NLRVEAKGKE IKP
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99292227